{"id":3121,"date":"2024-02-09T09:23:14","date_gmt":"2024-02-09T09:23:14","guid":{"rendered":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/?p=3121"},"modified":"2024-02-09T10:32:34","modified_gmt":"2024-02-09T10:32:34","slug":"nucpreda-protein-binding-nucleotide-predictor","status":"publish","type":"post","link":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/nucpreda-protein-binding-nucleotide-predictor\/","title":{"rendered":"Nucpred Protein Binding Nucleotide Predictor, IIT Kharagpur"},"content":{"rendered":"\n

Nucpred server allows user to predict protein-binding and non-binding nucleotides for a given RNA sequence. It uses the default RF based model developed with NC-triplet feature profile generated from the query sequence.<\/p>\n\n\n\n

What is “Nucpred”?<\/h3>\n\n\n\n

Nucpred-Manual<\/h4>\n\n\n\n
    \n
  1. Either type or paste the input RNA sequence in FASTA format or upload a FASTA file using the Browse button.<\/li>\n\n\n\n
  2. Click on the submit button to run the prediction. The webserver uses the default RF-NC-triplet model for prediction, once the user submit the query sequence.<\/li>\n\n\n\n
  3. Users can optionally select other prediction models such as RF-NC-quartet, SVMFBF, or KNN developed using quartet nucleotide composition feature and other optimized ML algorithms using the select prediction model button.<\/li>\n\n\n\n
  4. On submitting the query sequence, the output of prediction result is displayed on the screen. Each nucleotide is assigned a prediction annotation (1\/0) for protein-binding and non-binding nucleotides along with their raw probability scores. Optionally, user can download the prediction results by clicking on the Download here link.<\/li>\n\n\n\n
  5. The Test Run button allows user to check an example (test case) input sequence and the corresponding prediction results.<\/li>\n<\/ol>\n\n\n\n
    \n
    Browse<\/gwmw><\/a><\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

    Nucpred server allows user to predict protein-binding and non-binding nucleotides for a given RNA sequence. It uses the default RF […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""}}},"categories":[54],"tags":[56],"_links":{"self":[{"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/posts\/3121"}],"collection":[{"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/comments?post=3121"}],"version-history":[{"count":2,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/posts\/3121\/revisions"}],"predecessor-version":[{"id":3145,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/posts\/3121\/revisions\/3145"}],"wp:attachment":[{"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/media?parent=3121"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/categories?post=3121"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/tags?post=3121"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}