{"id":3214,"date":"2024-02-12T09:10:06","date_gmt":"2024-02-12T09:10:06","guid":{"rendered":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/?p=3214"},"modified":"2024-02-12T09:10:09","modified_gmt":"2024-02-12T09:10:09","slug":"oryza-coarctata-genomr-jnu","status":"publish","type":"post","link":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/oryza-coarctata-genomr-jnu\/","title":{"rendered":"Oryza coarctata\u00a0Genomr, JNU"},"content":{"rendered":"\n

Oryza coarctata<\/em>\u00a0(Porteresia coarctata<\/em>\u00a0Tateoka) is a wild halophyte, which shows considerable adaptation to high salinity (20-40 dS m-1) and submergence stresses. It is a close wild relative of rice and can serve as an important source of genes related to salinity and submergence tolerance. This webpage provides draft sequence and annotation of\u00a0Oryza coarctata<\/em>\u00a0genome. The current scaffold-level draft genome assembly was generated using short-read Illumina data along with transcriptome and BAC-end data sets.
In addition, expression levels of the protein coding genes annotated in the genome under salinity and\/or submergence stresses are provided as expression matrix. Further, annotation and expression levels of predicted long non-coding RNAs are given. A list of miRNAs identified based on small RNA sequencing data along with their targets is also provided here. Moreover, we provide a signle base resolution methylation map of\u00a0O. coarctata<\/em>\u00a0via positions of the methylated cytosines in CG, CHG and CHH sequence contexts. The data can serve as a resource for functional genomics studies and engineering salinity and submergence tolerance in rice.<\/p>\n\n\n\n

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Oryza coarctata\u00a0(Porteresia coarctata\u00a0Tateoka) is a wild halophyte, which shows considerable adaptation to high salinity (20-40 dS m-1) and submergence stresses. […]<\/p>\n","protected":false},"author":1,"featured_media":3215,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""}}},"categories":[48],"tags":[],"_links":{"self":[{"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/posts\/3214"}],"collection":[{"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/comments?post=3214"}],"version-history":[{"count":1,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/posts\/3214\/revisions"}],"predecessor-version":[{"id":3216,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/posts\/3214\/revisions\/3216"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/media\/3215"}],"wp:attachment":[{"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/media?parent=3214"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/categories?post=3214"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/tags?post=3214"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}