{"id":3309,"date":"2024-02-13T10:17:51","date_gmt":"2024-02-13T10:17:51","guid":{"rendered":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/?p=3309"},"modified":"2024-02-13T10:21:58","modified_gmt":"2024-02-13T10:21:58","slug":"protein-feature-visualisation-on-3d-structure-savitribai-phule-pune-university","status":"publish","type":"post","link":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/protein-feature-visualisation-on-3d-structure-savitribai-phule-pune-university\/","title":{"rendered":"Protein Feature Visualisation on 3D structure, Savitribai Phule Pune University"},"content":{"rendered":"\n<p><strong>Protein Feature Visualisation on 3D structure (PFV3D)<\/strong>\u00a0is an online server to facilitate the mapping and visualization of UniProt feature annotation\/s (Domain, Secondary structure, Active site\/s etc.) as well as user specified feature\/s on the corresponding 3D structure. Description of feature annotations is available on UniProt help section:\u00a0<a href=\"https:\/\/www.uniprot.org\/help\/sequence_annotation\">https:\/\/www.uniprot.org\/help\/sequence_annotation<\/a><br>The server also provides utility for\u00a0<strong>UniProt to PDB or PDB to UniProt Residue mapping<\/strong>\u00a0which is a very tedious task to do manually. Along with residue mapping, the utility also provides information on residues for which co-ordinates are missing in PDB file.<br>A specialized\u00a0<strong>Perl module<\/strong>\u00a0has been developed for extraction and downloading of UniProt feature annotation\/s (sub-sequences of features) in a customized manner. User can download and use this module from the GitHub page:\u00a0<a href=\"https:\/\/github.com\/rajivkarbhal\/SFV\">https:\/\/github.com\/rajivkarbhal\/SFV<\/a><gwmw style=\"display:none;\"><\/gwmw><\/p>\n\n\n\n<div class=\"wp-block-buttons is-layout-flex\">\n<div class=\"wp-block-button\"><a class=\"wp-block-button__link wp-element-button\" href=\"http:\/\/bioinfo.unipune.ac.in\/PFV3D\/Home.html\" target=\"_blank\" rel=\"noreferrer noopener\">Browse<\/a><\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Protein Feature Visualisation on 3D structure (PFV3D)\u00a0is an online server to facilitate the mapping and visualization of UniProt feature annotation\/s [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":3310,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-gradient":""}}},"categories":[54],"tags":[],"_links":{"self":[{"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/posts\/3309"}],"collection":[{"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/comments?post=3309"}],"version-history":[{"count":2,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/posts\/3309\/revisions"}],"predecessor-version":[{"id":3312,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/posts\/3309\/revisions\/3312"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/media\/3310"}],"wp:attachment":[{"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/media?parent=3309"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/categories?post=3309"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/apexbtic.icgeb.res.in\/btisnet\/wp-json\/wp\/v2\/tags?post=3309"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}