S.No.	Authors	Title	Journal	Volume	Pages	Year
1	#Ravichandran, Sathyabaarathi#Banerjee, Ushashi#DR, Gayathri Devi#Kandukuru, Rooparani#Thakur, Chandrani#Chakravortty, Dipshikha#Balaji, Kithiganahalli Narayanaswamy#Singh, Amit#Chandra, Nagasuma	VB10, a new blood biomarker for differential diagnosis and recovery monitoring of acute viral and bacterial infections	EBioMedicine	67	103352	2021
2	#Guttapadu, Ranjitha#Korla, Kalyani#Uk, Safnaz#Annam, Vamseedhar#Ashok, Purnima#Chandra, Nagasuma	Identification of Probucol as a candidate for combination therapy with Metformin for Type 2 diabetes	npj Systems Biology and Applications	9	18	2023
3	#Rao, Vishal#Banerjee, Ushashi#Sambaturu, Narmada#Chunchanur, Sneha#Ambica, R#Chandra, Nagasuma	Pressured cytotoxic T cell epitope strength among SARS‐CoV‐2 variants correlates with COVID‐19 severity	HLA			2023
4	#Guttapadu, Ranjitha#Prakash, Nandini#Chatterjee, Ritika#Sastry, Usha MK#Subramanyam, Jayshree Rudrapatna#Chakravortty, Dipshikha#Chandra, Nagasuma	Profiling system-wide variations and similarities between Rheumatic Heart Disease and Acute Rheumatic Fever–A pilot analysis	PLoS neglected tropical diseases	17	e0011263	2023
5	#Rao, Vishal#Chandra, Nagasuma	In-silico study of influence of HLA heterogeneity on CTL responses across ethnicities to SARS-CoV-2	Human Immunology	83	797	2022
6	#Banerjee, Ushashi#Rao, Pragati#Reddy, Megha#Hussain, Meeran#Chunchanur, Sneha#Ambica, R#Singh, Amit#Chandra, Nagasuma	A 9-gene biomarker panel identifies bacterial coinfections in culture-negative COVID-19 cases	Molecular Omics	18	814	2022
7	#Banerjee, Ushashi#Baloni, Priyanka#Singh, Amit#Chandra, Nagasuma	Immune subtyping in latent tuberculosis	Frontiers in Immunology	12	595746	2021
8	#Sankar, Santhosh#Chandran Sakthivel, Naren#Chandra, Nagasuma	Fast Local Alignment of Protein Pockets (FLAPP): A system-compiled program for large-scale binding site alignment	Journal of Chemical Information and Modeling	62	4810	2022
9	#Sambaturu, Narmada#Pusadkar, Vaidehi#Hannenhalli, Sridhar#Chandra, Nagasuma	PathExt: a general framework for path-based mining of omics-integrated biological networks	Bioinformatics	37	1254	2021
10	#Thakur, Chandrani#Tripathi, Ashutosh#Ravichandran, Sathyabaarathi#Shivananjaiah, Akshatha#Chakraborty, Anushree#Varadappa, Sreekala#Chikkavenkatappa, Nagaraj#Nagarajan, Deepesh#Lakshminarasimhaiah, Sharada#Singh, Amit	A new blood-based RNA signature (R9), for monitoring effectiveness of tuberculosis treatment in a South Indian longitudinal cohort	Iscience	25	103745	2022
11	#Khan, Danish#Ara, Tarannum#Ravi, Venkatraman#Rajagopal, Raksha#Tandon, Himani#Parvathy, Jayadevan#Gonzalez, Edward A#Asirvatham-Jeyaraj, Ninitha#Krishna, Swati#Mishra, Sneha	SIRT6 transcriptionally regulates fatty acid transport by suppressing PPARγ	Cell reports	35	109190	2021
12	#Prabantu, Vasam Manjveekar#Naveenkumar, Nagarajan#Srinivasan, Narayanaswamy	Influence of disease-causing mutations on protein structural networks	Frontiers in Molecular Biosciences	7	620554	2021
13	#Ravikumar, Ashraya#de Brevern, Alexandre G#Srinivasan, Narayanaswamy	Conformational strain indicated by ramachandran angles for the protein backbone is only weakly related to the flexibility	The Journal of Physical Chemistry B	125	2597	2021
14	#Chakraborti, Sohini#Hatti, Kaushik#Srinivasan, Narayanaswamy	‘All That Glitters Is Not Gold’: High-Resolution Crystal Structures of Ligand-Protein Complexes Need Not Always Represent Confident Binding Poses	International Journal of Molecular Sciences	22	6830	2021
15	#Chakraborti, Sohini#Chakraborty, Moubani#Bose, Avipsa#Srinivasan, Narayanaswamy#Visweswariah, Sandhya S	Identification of potential binders of Mtb Universal Stress Protein (Rv1636) through an in silico approach and insights into compound selection for experimental validation	Frontiers in Molecular Biosciences	8	599221	2021
16	#Manikandan, Parthasarathy#Sandhya, Sankaran#Nadig, Kavyashree#Paul, Souradip#Srinivasan, Narayanaswamy#Rothweiler, Ulli#Singh, Mahavir	Identification, functional characterization, assembly and structure of ToxIN type III toxin–antitoxin complex from E. coli	Nucleic acids research	50	1687	2022
17	#Yazhini, Arangasamy#Sidhanta, Das Swayam Prakash#Srinivasan, Narayanaswamy	D614G substitution at the hinge region enhances the stability of trimeric SARS-CoV-2 spike protein	Bioinformation	17	439	2021
18	#Paul, Anindita#Subhadarshini, Seemadri#Srinivasan, Narayanaswamy	Pseudokinases repurpose flexibility signatures associated with the protein kinase fold for noncatalytic roles	Proteins: Structure, Function, and Bioinformatics	90	747	2022
19	#Ravikumar, Ashraya#Gopnarayan, Mrugsen Nagsen#Subramaniam, Sriram#Srinivasan, Narayanaswamy	Comparison of side-chain dispersion in protein structures determined by cryo-EM and X-ray crystallography	IUCrJ	9	98	2022
20	#Yazhini, Arangasamy#Srinivasan, Narayanaswamy#Sandhya, Sankaran	Sequence divergence and functional specializations of the ancient spliceosomal SF3b: implications in flexibility and adaptations of the multi-protein complex	Frontiers in Genetics	12	2693	2022
21	#Kalmankar, Neha V#Pavalam, Murugavel#Indrakumar, Sowmya#Srinivasan, Narayanaswamy#Sowdhamini, Ramanathan	DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins	Database	2022		2022
22	#Kumar, Gayatri#Srinivasan, Narayanaswamy#Sandhya, Sankaran	Profiles of Natural and Designed Protein-Like Sequences Effectively Bridge Protein Sequence Protein sequences Gaps: Implications in Distant Homology Homology Detection	Data Mining Techniques for the Life Sciences		149	2022
23	#Naveenkumar, Nagarajan#Prabantu, Vasam Manjveekar#Vishwanath, Sneha#Sowdhamini, Ramanathan#Srinivasan, Narayanaswamy	Structures of distantly related interacting protein homologs are less divergent than non‐interacting homologs	FEBS Open Bio			2022
24	#Yazhini, Arangasamy#Sandhya, Sankaran#Srinivasan, Narayanaswamy	Rewards of divergence in sequences, 3-D structures and dynamics of yeast and human spliceosome SF3b complexes	Current Research in Structural Biology	3	133	2021
25	#Ravikumar, Ashraya#Srinivasan, Narayanaswamy	Hypervariability of accessible and inaccessible conformational space of proteins	Current research in structural biology	3	229	2021
26	#Parvathy, Jayadevan#Yazhini, Arangasamy#Srinivasan, Narayanaswamy#Sowdhamini, Ramanathan	Interfacial residues in protein-protein complexes are in the eyes of the beholder	bioRxiv		2023	2023
27	#Yazhini, Arangasamy#Srinivasan, Narayanaswamy#Sandhya, Sankaran	Signatures of conserved and unique molecular features in Afrotheria	Scientific Reports	11	1011	2021
28	#Bheemireddy, Sneha#Sandhya, Sankaran#Srinivasan, Narayanaswamy	Comparative analysis of structural and dynamical features of ribosome upon association with mRNA reveals potential role of ribosomal proteins	Frontiers in Molecular Biosciences	8	654164	2021
29	#Janaki, Chintalapati#Gowri, Venkatraman S#Srinivasan, Narayanaswamy	Master Blaster: an approach to sensitive identification of remotely related proteins	Scientific Reports	11	8746	2021
30	#Bheemireddy, Sneha#Srinivasan, Narayanaswamy	Computational Study on the Dynamics of Mycobacterium Tuberculosis RNA Polymerase Assembly	Prokaryotic Gene Regulation: Methods and Protocols		61	2022
31	#Kumar, Gayatri#Srinivasan, Narayanaswamy#Sandhya, Sankaran	Profiles of Natural and Designed Protein-Like Sequences Effectively Bridge Protein Sequence Gaps: Implications in Distant Homology Detection	Data Mining Techniques for the Life Sciences		149	2022
32	#Chakraborti, Sohini#Bheemireddy, Sneha#Srinivasan, Narayanaswamy	Computational Methods and Tools for Repurposing of Drugs Against Coronaviruses	In Silico Modeling of Drugs Against Coronaviruses: Computational Tools and Protocols		163	2021
33	#Prabantu, Vasam Manjveekar#Gadiyaram, Vasundhara#Vishveshwara, Saraswathi#Srinivasan, Narayanaswamy	Understanding structural variability in proteins using protein structural networks	Current Research in Structural Biology	4	134	2022
34	#Narwani, Tarun Jairaj#Srinivasan, Narayanaswamy#Chakraborti, Sohini	NOD: a web server to predict N ew use of O ld D rugs to facilitate drug repurposing	Scientific Reports	11	13540	2021
35	#Yazhini, Arangasamy#Chakraborti, Sohini#Srinivasan, Narayanaswamy	Protein Structure, Dynamics and Assembly: Implications for Drug Discovery	Innovations and Implementations of Computer Aided Drug Discovery Strategies in Rational Drug Design		91	2021
36	#Naveenkumar, Nagarajan#Prabantu, Vasam Manjveekar#Vishwanath, Sneha#Sowdhamini, Ramanathan#Srinivasan, Narayanaswamy	Structures Of Remotely Related Interacting Protein Homologues Are Less Divergent Than Non-Interacting Homologues				2022
37	#Bheemireddy, Sneha#Sandhya, Sankaran#Srinivasan, Narayanaswamy#Sowdhamini, Ramanathan	Computational tools to study RNA-protein complexes	Frontiers in Molecular Biosciences	9		2022
38	#Chedere, Adithya#Mishra, Madhulika#Kulkarni, Omkar#Sriraman, Shrisruti#Chandra, Nagasuma	Personalized quantitative models of NAD metabolism in hepatocellular carcinoma identify a subgroup with poor prognosis	Frontiers in Oncology	12		2022
39	Rao, Vishal, Banerjee, Ushashi, Sambaturu, Narmada, Chunchanur, Sneha, Ambica, R, Chandra, Nagasuma	Predicted CTL responses from pressured epitopes in SARS-CoV-2 correlate with COVID-19 severity	medRxiv		2021	2021