S.No.	Authors	Title	Journal	Volume	Pages	Year
1	#Chakraborty, Atreyi#Srimali, Saksham#Topno, Rohan#Ranshur, Ajinkya#Madhusudhan, Mallur Srivatsan	N/A	Nucleic Acids Research		gkaf420	2025
2	#Chakraborty, Atreyi#Chopde, Sumant#Madhusudhan, Mallur Srivatsan	Motif distribution in genomes gives insights into gene clustering and co-regulation	Nucleic Acids Research	53	gkae1178	2025
3	#Vaidya, Kaveri#Rodrigues, Golding#Gupta, Sonali#Devarajan, Archit#Yeolekar, Mihika#Madhusudhan, M. S.#Kamat, Siddhesh S.	Identification of sequence determinants for the ABHD14 enzymes	Proteins: Structure, Function, and Bioinformatics	93	255	2025
4	#Shanbhag, Karthik#Mhetre, Amol B.#Saharan, Ojal#Devarajan, Archit#Rai, Anisha#Madhusudhan, M. S.#Chakrapani, Harinath#Kamat, Siddhesh S.	Chemical Proteomics Identifies Protein Ligands for Monoacylglycerol Lipids				2024
5	#Mukundan, S.#Deshpande, Girish#Madhusudhan, M. S.	High-affinity biomolecular interactions are modulated by low-affinity binders	npj Systems Biology and Applications	10	85	2024
6	#Kale, Tanvi#Dasgupta, Ryth#Inamdar, Mandar M.#Athale, Chaitanya A.	Mechanics of E. coli cell width homeostasis and bulging dynamics from MreB and septum inhibition				2024
7	#Khatri, Dhruv#Athale, Chaitanya A.	Deep learning based reconstruction of embryonic cell-division cycle from label-free microscopy time-series of evolutionarily diverse nematodes				2024
8	#Khatri, Dhruv#Yadav, Shivani A#Athale, Chaitanya A	KnotResolver: tracking self-intersecting filaments in microscopy using directed graphs	Bioinformatics	40	btae538	2024