Publications Details
S.No. Authors Title Journal Volume Pages Year
1 #Singh, Vishakha#Dhankhar, Poonam#Dalal, Vikram#Tomar, Shailly#Golemi-Kotra, Dasantila#Kumar, Pravindra Drug-Repurposing Approach To Combat Staphylococcus aureus: Biomolecular and Binding Interaction Study ACS Omega 7 38448 2022
2 #Bhattacharya, Sourya#Junghare, Vivek#Hazra, Mousumi#Pandey, Niteesh Kumar#Mukherjee, Abirlal#Dhankhar, Kunal#Das, Neeladrisingha#Roy, Partha#Dubey, Ramesh Chandra#Hazra, Saugata Characterization of a Class A β-Lactamase from Francisella tularensis (Ftu-1) Belonging to a Unique Subclass toward Understanding AMR ACS Bio Med Chem Au 3 174 2023
3 #Kaur, Harry#Rode, Surabhi#KP, Sandra#Mahto, Jai Krishna#Alam, Md Shahid#Gupta, Deena Nath#Kar, Bibekananda#Singla, Jitin#Kumar, Pravindra#Sharma, Ashwani Kumar Characterization of haloacid dehalogenase superfamily acid phosphatase from Staphylococcus lugdunensis Archives of Biochemistry and Biophysics 753 109888 2024
4 #Choudhary, Shweta#Nehul, Sanketkumar#Kumar, Amith#Sharma, Swati#Rani, Ruchi#Saha, Ankita#Sharma, Gaurav Kumar#Tomar, Shailly#Kumar, Pravindra Crystal structure and activity profiling of deubiquitinating inhibitors-bound to SARS-CoV-2 papain like protease revealed new allosteric sites for antiviral therapies 2022
5 #Dhaka, Preeti#Singh, Ankur#Choudhary, Shweta#Peddinti, Rama Krishna#Kumar, Pravindra#Sharma, Gaurav Kumar#Tomar, Shailly Mechanistic and thermodynamic characterization of antiviral inhibitors targeting nucleocapsid N-terminal domain of SARS-CoV-2 Archives of Biochemistry and Biophysics 750 109820 2023
6 #Choudhary, Shweta#Nehul, Sanketkumar#Singh, Ankur#Panda, Prasan Kumar#Kumar, Pravindra#Sharma, Gaurav Kumar#Tomar, Shailly Unraveling antiviral efficacy of multifunctional immunomodulatory triterpenoids against SARS-COV-2 targeting main protease and papain-like protease IUBMB Life 76 228 2024
7 #Bhatia, Pooja#Singh, Vedita Anand#Rani, Ruchi#Nath, Mala#Tomar, Shailly Cellular uptake of metal oxide-based nanocomposites and targeting of chikungunya virus replication protein nsP3 Journal of Trace Elements in Medicine and Biology 78 127176 2023
8 #Singh, Kavya#Maurya, Harshit#Singh, Parthasarathi#Panda, Pujarani#Behera, Amit Kumar#Jamal, Arshad#Eslavath, Ganesh#Mohapatra, Somesh#Chauhan, Harsh#Sharma, Deepak DISPEL: database for ascertaining the best medicinal plants to cure human diseases Database 2023 baad073 2023
9 #Singh, Vishakha#Dhankhar, Poonam#Dalal, Vikram#Tomar, Shailly#Kumar, Pravindra In-silico functional and structural annotation of hypothetical protein from Klebsiella pneumonia: A potential drug target Journal of Molecular Graphics and Modelling 116 108262 2022
10 #Lonare, Sapna#Rode, Surabhi#Verma, Preeti#Verma, Shalja#Kaur, Harry#Alam, Md Shahid#Wangmo, Padma#Kumar, Pravindra#Roy, Partha#Sharma, Ashwani Kumar Characterization of AICAR transformylase/IMP cyclohydrolase (ATIC) bifunctional enzyme from Candidatus Liberibacer asiaticus Biochimica et biophysica acta. Proteins and proteomics 1872 141015 2024
11 #Mahajan, Supreeti#Kumar, Ravi#Singh, Ankur#Dhaka, Preeti#Pareek, Akshay#Kumar, Pravindra#Tomar, Shailly Targeting the host protein G3BP1 for the discovery of novel antiviral inhibitors against Chikungunya virus Virology 608 110551 2025
12 #Dhaka, Preeti#Mahto, Jai Krishna#Singh, Ankur#Kumar, Pravindra#Tomar, Shailly Structural insights into the RNA binding inhibitors of the C-terminal domain of the SARS-CoV-2 nucleocapsid Journal of Structural Biology 217 108197 2025
13 #Nehul, Sanketkumar#Rani, Ruchi#Walia, Priyanshu#Panda, Prasan Kumar#Singh, Sharad#Chattopadhyay, Soma#Kumar, Pravindra#Tomar, Shailly Repurposing Efavirenz, the HIV Antiretroviral Drug for Chikungunya Virus Infection ACS Infect. Dis. 11 963 2025
14 #Singh, Ankur#Jangid, Kuldeep#Nehul, Sanketkumar#Dhaka, Preeti#Rani, Ruchi#Pareek, Akshay#Sharma, Gaurav Kumar#Kumar, Pravindra#Tomar, Shailly Structural and Mechanistic Insights into the Main Protease (Mpro) Dimer Interface Destabilization Inhibitor: Unveiling New Therapeutic Avenues against SARS-CoV-2 Biochemistry 64 1589 2025
15 #Dhaka, Preeti#Singh, Ankur#Nehul, Sanketkumar#Choudhary, Shweta#Panda, Prasan Kumar#Sharma, Gaurav Kumar#Kumar, Pravindra#Tomar, Shailly Disruption of Molecular Interactions between the G3BP1 Stress Granule Host Protein and the Nucleocapsid (NTD-N) Protein Impedes SARS-CoV-2 Virus Replication Biochemistry 64 823 2025
16 #Singh, Vishakha#Bhutkar, Mandar#Choudhary, Shweta#Nehul, Sanketkumar#Kumar, Rajesh#Singla, Jitin#Kumar, Pravindra#Tomar, Shailly Structure-guided mutations in CDRs for enhancing the affinity of neutralizing SARS-CoV-2 nanobody Biochemical and Biophysical Research Communications 734 150746 2024
17 #Bhutkar, Mandar#Saha, Ankita#Tomar, Shailly Viral methyltransferase inhibitors: berbamine, venetoclax, and ponatinib as efficacious antivirals against chikungunya virus Archives of Biochemistry and Biophysics 759 110111 2024
18 #Bhutkar, Mandar#Kumar, Amith#Rani, Ruchi#Singh, Vishakha#Saha, Ankita#Pathak, Akashjyoti#Kothiala, Aditi#Mahajan, Supreeti#Waghmode, Bhairavnath#Verma, Shalja#Kumar, Ravi#Mudgal, Rajat#Sircar, Debabrata#Kumar, Pravindra#Tomar, Shailly Structure-based identification of herbacetin and caffeic acid phenethyl ester as inhibitors of S-adenosylmethionine-dependent viral methyltransferase FEBS Letters n/a 2025
19 #Nair ,Adwaita S. R.#, Samanta ,Arup# and Hazra ,Saugata Understanding the basis of thermostability for enzyme “Nanoluc” towards designing industry-competent engineered variants Journal of Biomolecular Structure and Dynamics 1
20 #Verma, Shalja#Singh, Anika#Kumar, Pravindra#Singla, Jitin In-silico characterization of a hypothetical protein of Sulfobacillus sp. hq2 for degradation of phthalate diesters International Journal of Biological Macromolecules 280 136006 2024
21 #Verma, Shalja#Choudhary, Shweta#Amith Kumar, Kamble#Mahto, Jai Krishna#Vamsi K, Anil Kumar#Mishra, Ishani#Prakash, Vellanki Bhanu#Sircar, Debabrata#Tomar, Shailly#Kumar Sharma, Ashwani#Singla, Jitin#Kumar, Pravindra Mechanistic and structural insights into EstS1 esterase: A potent broad-spectrum phthalate diester degrading enzyme Structure 33 247 2025
22 #Jangid, Kuldeep#Mahto, Jai Krishna#Kumar, K Amith#Dhaka, Preeti#Sharma, Anchal#Tariq, Amaan#Sharma, Ashwani Kumar#Kumar, Pravindra Structural and biochemical analyses reveal quinic acid inhibits DAHP synthase a key player in shikimate pathway Archives of Biochemistry and Biophysics 763 110219 2025