Publications Details
S.No. Authors Title Journal Volume Pages Year
1 #Verma, Shailya#Menon, Revathy#Sowdhamini, Ramanathan Structural insights into the role of deleterious mutations at the dimeric Proteins: Structure, Function, and Bioinformatics 92 1242-1258 2024
2 #Sharma, Abhishek#Chandrashekar, C R#Krishna, Sudhir#Sowdhamini, Ramanathan Computational Analysis of the Accumulation of Mutations in Therapeutically Journal of Molecular Biology 436 168716 2024
3 #Nayak, Soumya#Regati, Dheemanth Reddy#Sowdhamini, Ramanathan Computational analysis of human gut microbial prolyl oligopeptidases Scientific Reports 14 19641 2024
4 #Mahadevan, Chidambareswaren#Shafi, K Mohamed#Nagarathnam, B#Sakuntala, Manjula#Sowdhamini, Ramanathan Transcriptional regulation of hormone signalling genes in black pepper in BMC genomics 25 910 2024
5 #Joshi, Sarthak#Mohapatra, Shailendu#Kumar, Dhwani#Joshi, Adwait#Iyer, Meenakshi#Sowdhamini, Ramanathan GenDiS3 database: census on the prevalence of protein domain superfamilies Database 2025 baaf035 2025
6 #Krishnan, Sushma#Karpe, Snehal Dilip#Kumar, Hithesh#Nongbri, Lucy B#Venkateswaran, Vignesh#Sowdhamini, Ramanathan#Grosse‐Wilde, Ewald#Hansson, Bill S#Borges, Renee M Sensing volatiles throughout the body: geographic‐and tissue‐specific Insect Science 2024
7 #Bheemireddy, Sneha#Sowdhamini, Ramanathan#Srinivasan, Narayanaswamy Computational analysis of the effect of a binding protein (RbpA) on the PloS one 20 e0317187 2025
8 #Verma, Shailya#Sowdhamini, Ramanathan Toll-like receptor 4 pathway evolutionary trajectory and functional Frontiers in Immunology 15 1494017 2025
9 #Panda, Siddharth#Anandan, Annamalai#Shafi, K Mohamed#Naika, Mahantesha B N#Sowdhamini, R#Vanishree, G#Sarkar, Sutapa#Travis, Anthony J#Norton, Gareth J#Price, Adam H Genome-wide association study reveals effect of nsSNPs on candidate genes Functional & integrative genomics 24 198 2024
10 #Meenakshi S, Iyer#Rao, Madan#Mayor, Satyajit#Sowdhamini, Ramanathan A census of actin-associated proteins in humans Frontiers in Cell and Developmental Biology 11 2023
11 #Tiwari, Vikas#Sowdhamini, R. Structure modelling of odorant receptor from Aedes aegypti and identification of potential repellent molecules Computational and Structural Biotechnology Journal 21 2204 2023
12 #Joshi, Adwait#P, Praveen#Ramakrishnan, Uma#Sowdhamini, Ramanathan Draft genome sequence of an invasive plant Lantana camara L. Bioinformation 18 2022
13 #Bhattacharyya, Teerna#Ghosh, Avishek#Verma, Shailya#Raghu, Padinjat#Sowdhamini, Ramanathan Structural rationale to understand the effect of disease-associated mutations on Myotubularin Current Research in Structural Biology 5 100100 2023
14 #Chauhan, Pankaj Kumar#Sowdhamini, R. Computational analysis of the flexibility in the disordered linker region connecting LIM domains in cysteine–glycine-rich protein Frontiers in Genetics 14 2023
15 #Tiwari, Vikas#Sowdhamini, R. Structural modelling and dynamics of full-length of TLR10 sheds light on possible modes of dimerization, ligand binding and mechanism of action Current Research in Structural Biology 5 100097 2023
16 #Sharma, Abhishek#Krishna, Sudhir#Sowdhamini, Ramanathan Bioinformatics Analysis of Mutations Sheds Light on the Evolution of Dengue NS1 Protein With Implications in the Identification of Potential Functional and Druggable Sites Molecular Biology and Evolution 40 msad033 2023
17 #Mam, Bhavika#Karpe, Snehal D.#Sowdhamini, Ramanathan Minus-C subfamily has diverged from Classic odorant-binding proteins in honeybees Apidologie 54 12 2023
18 #Chauhan, Pankaj Kumar#Sowdhamini, Ramanathan Integrative network analysis interweaves the missing links in cardiomyopathy diseasome Scientific Reports 12 19670 2022
19 #Shafi, K. Mohamed#Sajeevan, Radha Sivarajan#Kouser, Sania#Vishnuprasad, Chethala N.#Sowdhamini, Ramanathan Transcriptome profiling of two Moringa species and insights into their antihyperglycemic activity BMC Plant Biology 22 561 2022
20 #Bheemireddy, Sneha#Sandhya, Sankaran#Srinivasan, Narayanaswamy#Sowdhamini, Ramanathan Computational tools to study RNA-protein complexes Frontiers in Molecular Biosciences 9 2022
21 #Kalmankar, Neha V.#Gehi, Bhuvaneshwari Rajendrakumar#Sowdhamini, Ramanathan Effects of a plant cyclotide on conformational dynamics and destabilization of β-amyloid fibrils through molecular dynamics simulations Frontiers in Molecular Biosciences 9 2022
22 #Naveenkumar, Nagarajan#Prabantu, Vasam Manjveekar#Vishwanath, Sneha#Sowdhamini, Ramanathan#Srinivasan, Narayanaswamy Structures of distantly related interacting protein homologs are less divergent than non-interacting homologs FEBS Open Bio 12 2147 2022
23 #Verma, Shailya#Sowdhamini, Ramanathan A genome-wide search of Toll/Interleukin-1 receptor (TIR) domain-containing adapter molecule (TICAM) and their evolutionary divergence from other TIR domain containing proteins Biology Direct 17 24 2022
24 #Naika, Mahantesha B. N.#Sathyanarayanan, Nitish#Sajeevan, Radha Sivarajan#Bhattacharyya, Teerna#Ghosh, Pritha#Iyer, Meenakshi S.#Jarjapu, Mahita#Joshi, Adwait G.#Harini, K.#Shafi, K. Mohamed#Kalmankar, Neha#Karpe, Snehal D.#Mam, Bhavika#Pasha, Shaik Naseer#Sowdhamini, Ramanathan Exploring the medicinally important secondary metabolites landscape through the lens of transcriptome data in fenugreek (Trigonella foenum graecum L.) Scientific Reports 12 13534 2022
25 #Shafi, K. Mohamed#Sowdhamini, Ramanathan Computational analysis of potential candidate genes involved in the cold stress response of ten Rosaceae members BMC Genomics 23 516 2022
26 #Bhattacharyya, Teerna#Nayak, Soumya#Goswami, Smit#Gadiyaram, Vasundhara#Mathew, Oommen K#Sowdhamini, Ramanathan PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe Database 2022 baac025 2022
27 #Kalmankar, Neha V#Pavalam, Murugavel#Indrakumar, Sowmya#Srinivasan, Narayanaswamy#Sowdhamini, Ramanathan DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins Database 2022 baac005 2022
28 #Chauhan, Pankaj Kumar#Sowdhamini, Ramanathan LIM domain-wide comprehensive virtual mutagenesis provides structural rationale for cardiomyopathy mutations in CSRP3 Scientific Reports 12 3562 2022
29 #Sankaradoss, Arun#Jagtap, Suraj#Nazir, Junaid#Moula, Shefta E.#Modak, Ayan#Fialho, Joshuah#Iyer, Meenakshi#Shastri, Jayanthi S.#Dias, Mary#Gadepalli, Ravisekhar#Aggarwal, Alisha#Vedpathak, Manoj#Agrawal, Sachee#Pandit, Awadhesh#Nisheetha, Amul#Kumar, Anuj#Bordoloi, Mahasweta#Shafi, Mohamed#Shelar, Bhagyashree#Balachandra, Swathi S.#Damodar, Tina#Masika, Moses Muia#Mwaura, Patrick#Anzala, Omu#Muthumani, Kar#Sowdhamini, Ramanathan#Medigeshi, Guruprasad R.#Roy, Rahul#Pattabiraman, Chitra#Krishna, Sudhir#Sreekumar, Easwaran Immune profile and responses of a novel dengue DNA vaccine encoding an EDIII-NS1 consensus design based on Indo-African sequences Special issue on emerging diseases 30 2058 2022
30 #Pulipati, Shalini#Somasundaram, Suji#Rana, Nitika#Kumaresan, Kavitha#Shafi, Mohamed#Civáň, Peter#Sellamuthu, Gothandapani#Jaganathan, Deepa#Ramaravi, Prasanna Venkatesan#Punitha, S.#Raju, Kalaimani#Mantri, Shrikant S.#Sowdhamini, R.#Parida, Ajay#Venkataraman, Gayatri Diversity of Sodium Transporter HKT1;5 in Genus Oryza Rice Science 29 31 2022
31 #Harini, K#Jayashree, S#Tiwari, Vikas#Vishwanath, Sneha#Sowdhamini, Ramanathan Ligand Docking Methods to Recognize Allosteric Inhibitors for G-Protein-Coupled Receptors Bioinform Biol Insights 15 11779322211037769 2021
32 #Juma, Meshack#Sankaradoss, Arun#Ndombi, Redcliff#Mwaura, Patrick#Damodar, Tina#Nazir, Junaid#Pandit, Awadhesh#Khurana, Rupsy#Masika, Moses#Chirchir, Ruth#Gachie, John#Krishna, Sudhir#Sowdhamini, Ramanathan#Anzala, Omu#Meenakshi, Iyer S. Antimicrobial Resistance Profiling and Phylogenetic Analysis of Neisseria gonorrhoeae Clinical Isolates From Kenya in a Resource-Limited Setting Frontiers in Microbiology 12 2021
33 #Bhattacharyya, Teerna#Sowdhamini, Ramanathan Genome-wide survey of tyrosine phosphatases in thirty mammalian genomes Cellular Signalling 84 110009 2021
34 #Ahmed, Asad#Mam, Bhavika#Sowdhamini, Ramanathan DEELIG: A Deep Learning Approach to Predict Protein-Ligand Binding Affinity Bioinform Biol Insights 15 11779322211030364 2021