S.No.	Authors	Title	Journal	Volume	Pages	Year
1	#Arora, Simran#Hamid, Fiza#Kumar, Shailesh	Fusion transcripts in plants: hidden layer of transcriptome complexity	Trends in Plant Science	30	229-231	2025
2	#Arya, Ajay#Arora, Simran#Hamid, Fiza#Kumar, Shailesh	PFusionDB: a comprehensive database of plant-specific fusion transcripts	3 Biotech	14	282	2024
3	#Bhardwaj, Rohan#Thakur, Jitendra Kumar#Kumar, Shailesh	MedProDB: A database of Mediator proteins	Computational and Structural Biotechnology Journal	19	4165-4176	2021
4	#Chitkara, Pragya#Singh, Ajeet#Gangwar, Rashmi#Bhardwaj, Rohan#Zahra, Shafaque#Arora, Simran#Hamid, Fiza#Arya, Ajay#Sahu, Namrata#Chakraborty, Srija#Ramesh, Madhulika#Kumar, Shailesh	The landscape of fusion transcripts in plants: a new insight into genome complexity	BMC Plant Biology	24	1162	2024
5	#Kalakoti, Garima#Vivek, A. T.#Kamboj, Anshul#Singh, Ajeet#Chakraborty, Srija#Kumar, Shailesh	Comprehensive profiling of rRNA-derived small RNAs in Arabidopsis thaliana using rsRNAfinder pipeline	MethodsX	12	102494	2024
6	#Maji, Sourobh#Waseem, Mohd#Sharma, Manish Kumar#Singh, Maninder#Singh, Anamika#Dwivedi, Nidhi#Thakur, Pallabi#Cooper, David G.#Bisht, Naveen C.#Fassler, Jan S.#Subbarao, Naidu#Khurana, Jitendra P.#Bhavesh, Neel Sarovar#Thakur, Jitendra Kumar	MediatorWeb: a protein–protein interaction network database for the RNA polymerase II Mediator complex	The FEBS Journal	291	3938-3960	2024
7	#Singh, Ajeet#Zahra, Shafaque#Das, Durdam#Kumar, Shailesh	PtRNAdb: a web resource of plant tRNA genes from a wide range of plant species	3 Biotech	12	185	2022
8	#Vivek, A. T.#Arya, Ajay#Swain, Supriya P.#Kumar, Shailesh	athisomiRDB: A comprehensive database of Arabidopsis isomiRs	Database	2024	baae115	2024
9	#Vivek, A. T.#Sahu, Namrata#Kalakoti, Garima#Kumar, Shailesh	ANNInter: A platform to explore ncRNA-ncRNA interactome of Arabidopsis thaliana	Computational Biology and Chemistry	115	108328	2025
10	#Zahra, Shafaque#Bhardwaj, Rohan#Sharma, Shikha#Singh, Ajeet#Kumar, Shailesh	PtncRNAdb: plant transfer RNA-derived non-coding RNAs (tncRNAs) database	3 Biotech	12	105	2022
11	#Zahra, Shafaque#Singh, Ajeet#Kumar, Shailesh	tncRNA Toolkit: A pipeline for convenient identification of RNA (tRNA)-derived non-coding RNAs	MethodsX	10	101991	2023