S.No.	Authors	Title	Journal	Volume	Pages	Year
1	#Birla, Shweta#Varshney, Toshit#Singh, Abhishek#Sharma, Arun#Panigrahi, Arnav#Gupta, Shikha#Gupta, Dinesh#Gupta, Viney	Machine learning-assisted prediction of trabeculectomy outcomes among patients of juvenile glaucoma by using 5-year follow-up data	Indian Journal of Ophthalmology			2024
2	#Gupta, Viney#Birla, Shweta#Varshney, Toshit#Somarajan, Bindu I.#Gupta, Shikha#Gupta, Mrinalini#Panigrahi, Arnav#Singh, Abhishek#Gupta, Dinesh	In vivo identification of angle dysgenesis and its relation to genetic markers associated with glaucoma using artificial intelligence	Indian Journal of Ophthalmology	72		2024
3	#Sharma, Arun#Garg, Aarti#Ramana, Jayashree#Gupta, Dinesh	VirulentPred 2.0: An improved method for prediction of virulent proteins in bacterial pathogens	Protein Science	32		2023
4	#Joon, Hemant Kumar#Thalor, Anamika#Gupta, Dinesh	Machine learning analysis of lung squamous cell carcinoma gene expression datasets reveals novel prognostic signatures	Computers in Biology and Medicine	165		2023
5	#Tyagi, Neetu#Roy, Shikha#Vengadesan, Krishnan#Gupta, Dinesh	Multi-omics approach for identifying CNV-associated lncRNA signatures with prognostic value in prostate cancer	Non-coding RNA Research	9		2024
6	#Swain, Supriya P.#Ahamad, Shahzaib#Samarth, Nikhil#Singh, Shailza#Gupta, Dinesh#Kumar, Shailesh	In silico studies of alkaloids and their derivatives against N-acetyltransferase EIS protein from Mycobacterium tuberculosis	Journal of Biomolecular Structure and Dynamics			2023
7	#Roy, Shikha#Gupta, Dinesh	Analysis of breast cancer next-generation sequencing datasets for identifying fusion genes responsible for the cancer progression	Informatics in Medicine Unlocked	41		2023
8	#Ahamad, Shahzaib#Junaid, Iqbal Taliy#Gupta, Dinesh	Computational design of novel tau-tubulin kinase 1 inhibitors for neurodegenerative diseases	Pharmaceuticals	17	952	2024
9	#Ahmad, Shaban#Bano, Nagmi#Khanna, Kushagra#Gupta, Dinesh#Raza, Khalid	Reporting multitargeted potency of Tiaprofenic acid against lung cancer: Molecular fingerprinting, MD simulation, and MTT-based cell viability assay studies	International Journal of Biological Macromolecules	276	133872	2024
10	#Birla, Shweta#Varshney, Toshit#Singh, Abhishek#Sharma, Arun#Panigrahi, Arnav#Gupta, Shikha#Gupta, Dinesh#Gupta, Viney	Machine learning-assisted prediction of trabeculectomy outcomes among patients of juvenile glaucoma by using 5-year follow-up data	Indian Journal of Ophthalmology	72	987-993	2024
11	#Kuldeep, Jitendra#Chaturvedi, Neeraj#Gupta, Dinesh	Novel molecular inhibitor design for Plasmodium falciparum Lactate dehydrogenase enzyme using machine learning generated library of diverse compounds	Molecular Diversity	28	2331-2344	2024
12	#Kumar, Sonu#Shanker, Asheesh#Gupta, Dinesh	pSATdb 2.0: a database of organellar common, polymorphic, and unique microsatellites	Functional & Integrative Genomics	24	1-13	2024
13	#Kumar, Sonu#Singh, Sangeeta#Kumar, Rakesh#Gupta, Dinesh	The Genomic SSR Millets Database (GSMDB): enhancing genetic resources for sustainable agriculture	Database	2024	baae114	2024
14	#Nanda, Shivam#Pandey, Rajan#Sardar, Rahila#Panda, Ashutosh#Naorem, Aruna#Gupta, Dinesh#Malhotra, Pawan	Comparative genomics of two protozoans Dictyostelium discoideum and Plasmodium falciparum reveals conserved as well as distinct regulatory pathways crucial for exploring novel therapeutic targets for Malaria	Heliyon	10		2024
15	#Pawan, Kumar#Vandana, Saini#Dinesh, Gupta#Pooja, A. Chawla#Ajit, Kumar	BBBper: A Machine Learning-based Online Tool for Blood-Brain Barrier (BBB) Permeability Prediction	CNS & Neurological Disorders - Drug Targets	24	1-9	2025
16	#Singh, Nidhi#Khan, Imteyaz Ahmad#Rashid, Safoora#Rashid, Sumaira#Roy, Shikha#Kaushik, Kriti#Kumar, Amit#Das, Prasenjit#Lalwani, Sanjeev#Gupta, Dinesh	MicroRNA Signatures for Pancreatic Cancer and Chronic Pancreatitis: Expression Profiling by NGS	Pancreas		10.1097	2024
17	#Yadav, Siddharth#Ahamad, Shahzaib#Gupta, Dinesh#Mathur, Puniti	Lead optimization, pharmacophore development and scaffold design of protein kinase CK2 inhibitors as potential COVID-19 therapeutics	Journal of Biomolecular Structure and Dynamics			2023
18	#Roy, Shikha#Gupta, Dinesh	DriverFuse: An R package for analysis of nextgeneration sequencing datasets to identify cancer driver fusion genes	PLoS ONE	17	1	2022
19	#Ahamad, Shahzaib#Gupta, Dinesh#Kumar, Vijay	Targeting SARS-CoV-2 nucleocapsid oligomerization: Insights from molecular docking and molecular dynamics simulations	Journal of Biomolecular Structure and Dynamics	40	2430	2022
20	#Ahamad, Shahzaib#Kanipakam, Hema#Gupta, Dinesh	Insights into the structural and dynamical changes of spike glycoprotein mutations associated with SARS-CoV-2 host receptor binding	Journal of Biomolecular Structure and Dynamics	40	263	2022
21	#Ahamad, Shahzaib#Hema, Kanipakam#Ahmad, Shahnawaz#Kumar, Vijay#Gupta, Dinesh	Insights into the structure and dynamics of SARS-CoV-2 spike glycoprotein double mutant L452R-E484Q	3 Biotech			2022
22	#Tyagi, Neetu#Sardar, Rahila#Gupta, Dinesh	Natural selection plays a significant role in governing the codon usage bias in the novel SARS-CoV-2 variants of concern (VOC)	PeerJ			2022
23	#Singh, Gagandeep#Gupta, Dinesh	In-Silico Functional Annotation of Plasmodium falciparum Hypothetical Proteins to Identify Novel Drug Targets	Frontiers in Genetics			2022
24	#Ahamad, Shahzaib#Ali, Hashim#Secco, Ilaria#Giacca, Mauro#Gupta, Dinesh	Anti-Fungal Drug Anidulafungin Inhibits SARS-CoV-2 Spike-Induced Syncytia Formation by Targeting ACE2-Spike Protein Interaction	Frontiers in Genetics			2022
25	#Thalor, Anamika#Kumar Joon, Hemant#Singh, Gagandeep#Roy, Shikha#Gupta, Dinesh	Machine learning assisted analysis of breast cancer gene expression profiles reveals novel potential prognostic biomarkers for triple-negative breast cancer	Computational and Structural Biotechnology Journal			2022
26	#Sardar, Rahila#Sharma, Arun#Gupta, Dinesh	Machine Learning Assisted Prediction of Prognostic Biomarkers Associated With COVID-19, Using Clinical and Proteomics Data	Frontiers in Genetics	12	1	2021
27	#Ahamad, Shahzaib#Kanipakam, Hema#Birla, Shweta#Ali, Md Shaukat#Gupta, Dinesh	Screening Malaria-box compounds to identify potential inhibitors against SARS-CoV-2 Mpro, using molecular docking and dynamics simulation studies	European Journal of Pharmacology	890		2021
28	#Ahamad, Shahzaib#Hema, Kanipakam#Kumar, Vijay#Gupta, Dinesh	The structural, functional, and dynamic effect of Tau tubulin kinase1 upon a mutation: A neuro-degenerative hotspot	Journal of Cellular Biochemistry			2021
29	#Hema, Kanipakam#Ahamad, Shahzaib#Joon, Hemant Kumar#Pandey, Rajan#Gupta, Dinesh	Atomic resolution homology models and molecular dynamics simulations of plasmodium falciparum tubulins	ACS Omega			2021
30	#Pandey, Rajan#Gupta, Priya#Mohmmed, Asif#Malhotra, Pawan#Gupta, Dinesh	A Plasmodium falciparum protein tyrosine phosphatase inhibitor identified from the ChEMBL-NTD database blocks parasite growth	FEBS Open Bio			2021
31	#Satish, Deepshikha#Mukherjee, Sunil Kumar#Gupta, Dinesh	The landscape of microRNAs in plant viral infections	Plant Gene			2021
32	#Shehzad, Sadaf#Pandey, Rajan#Malhotra, Pawan#Gupta, Dinesh	Computational design of novel allosteric inhibitors for plasmodium falciparum degp	Molecules			2021
33	Ahamad,Shahzaib,Kanipakam,Hema,Kumar, Vijay,Gupta,Dinesh	A molecular journey to check the conformational dynamics of tau tubulin kinase 2 mutations associated with Alzheimer's disease	RSC Advances	11		2021
34	#Birla, Shweta#Varshney, Toshit#Singh, Abhishek#Sharma, Arun#Panigrahi, Arnav#Gupta, Shikha#Gupta, Dinesh#Gupta, Viney	Machine learning-assisted prediction of trabeculectomy outcomes among patients of juvenile glaucoma by using 5-year follow-up data	Indian Journal of Ophthalmology			2024
35	#Gupta, Viney#Birla, Shweta#Varshney, Toshit#Somarajan, Bindu I.#Gupta, Shikha#Gupta, Mrinalini#Panigrahi, Arnav#Singh, Abhishek#Gupta, Dinesh	In vivo identification of angle dysgenesis and its relation to genetic markers associated with glaucoma using artificial intelligence	Indian Journal of Ophthalmology	72		2024
36	#Sharma, Arun#Garg, Aarti#Ramana, Jayashree#Gupta, Dinesh	VirulentPred 2.0: An improved method for prediction of virulent proteins in bacterial pathogens	Protein Science	32		2023
37	#Joon, Hemant Kumar#Thalor, Anamika#Gupta, Dinesh	Machine learning analysis of lung squamous cell carcinoma gene expression datasets reveals novel prognostic signatures	Computers in Biology and Medicine	165		2023
38	#Tyagi, Neetu#Roy, Shikha#Vengadesan, Krishnan#Gupta, Dinesh	Multi-omics approach for identifying CNV-associated lncRNA signatures with prognostic value in prostate cancer	Non-coding RNA Research	9		2024
39	#Swain, Supriya P.#Ahamad, Shahzaib#Samarth, Nikhil#Singh, Shailza#Gupta, Dinesh#Kumar, Shailesh	In silico studies of alkaloids and their derivatives against N-acetyltransferase EIS protein from Mycobacterium tuberculosis	Journal of Biomolecular Structure and Dynamics			2023
40	#Roy, Shikha#Gupta, Dinesh	Analysis of breast cancer next-generation sequencing datasets for identifying fusion genes responsible for the cancer progression	Informatics in Medicine Unlocked	41		2023